Tags: biology

All Categories (1-20 of 39)

  1. Adam Rumpf

    I am an applied mathematics instructor with a background in mathematical biology and operations research. I am quite interested in mathematics education and have released many open-access...

    https://www.simiode.org/members/6128

  2. 1-098-S-NeuronDetection

    25 Aug 2021 | | Contributor(s):: Joshua Goldwyn

    In this activity students will study a linear, first order, one-dimensional ordinary differential equation (ODE) and learn how it can be used to understand basics of neural dynamics. The modeling framework is known in the mathematical neuroscience literature as the ``integrate-and-fire''...

  3. Richard A Cangelosi

    I am an applied mathematician interested in modeling nonlinear phenomena. My focus is on applications related to the life sciences. I enjoy working collaboratively with Gonzaga undergraduates on...

    https://www.simiode.org/members/5927

  4. SIMIODE EXPO 2021 - (M-R3) - Case Study: A Model of Immunotherapy in Prostate Cancer

    28 Feb 2021 | | Contributor(s):: Becky Sanft, Anne Walter

    SIMIODE EXPO 2021 - (M-R3) - Case Study: A Model of Immunotherapy in Prostate Cancer Adventures in Co-Teaching a Data-Driven Modeling CourseBecky Sanft, University of North Carolina, Ashville NC USA and Anne Walter, St. Olaf College, Northfield MN USA    This was a...

  5. SIMIODE EXPO 2021 - (M-R3) - Adventures in Co-Teaching a Data-Driven Modeling Course

    28 Feb 2021 | | Contributor(s):: Becky Sanft, Anne Walter

    SIMIODE EXPO 2021 - (M-R3) - Minicourse on MathBio Wetlab Team Taught Course Adventures in Co-Teaching a Data-Driven Modeling CourseBecky Sanft, University of North Carolina, Ashville NC USA and Anne Walter, St. Olaf College, Northfield MN USA    This was a...

  6. 2021-Sanft, Rebecca, and Anne Walter - Exploring Mathematical Modeling in Biology Through Case Studies and Experimental Activities

    20 Jan 2021 | | Contributor(s):: Rebecca Sanft, Anne Walter

    Exploring Mathematical Modeling in Biology Through Case Studies and Experimental Activities, written collaboratively by a mathematician and biologist, provides supporting materials for a course taken simultaneously by students majoring in the mathematical sciences and those in the life sciences....

  7. 2017-Byrne, Helen - Further Mathematics Biology. Lecture notes.

    05 Apr 2020 | | Contributor(s):: Brian Winkel

    2017-Byrne-FurtherMathBiology-NotesByrne, Helen. 2017. Further Mathematics Biology. Lecture notes. University of Oxford. See https://www.maths.ox.ac.uk/system/files/attachments/MathBioNotes2017.pdf . An outline for this course. We will observe that many...

  8. 2004-Hsu, Sze-Bi - Mathematical Modelling In Biological Science. Class notes

    02 Apr 2020 | | Contributor(s):: Brian Winkel

    Hsu, Sze-Bi. 2014. Mathematical Modelling In Biological Science. Department of Mathematics,Tsing-Hua University TAIWAN. Class Notes. 67 pages.Table of ContentsIntroduction 1 Continuous population model for single species 11.1 Logistic equation...

  9. 2018-Winkle, James LJ., Oleg Igoshin, Matthew R. Bennett, Kresimir Josic, and William Ott - Modeling Mechanical Interactions in Growing Populations of Ros-Shaped Bacteria.

    01 Apr 2020 | | Contributor(s):: Brian Winkel

    Winkle, James LJ., Oleg Igoshin, Matthew R. Bennett, Kresimir Josic, and William Ott. 2018. Modeling Mechanical Interactions in Growing Populations of Ros-Shaped Bacteria.  Phys. Biol. 14(5): 1-15. See  https://www.ncbi.nlm.nih.gov/pubmed/28649958 .Abstract:...

  10. 2018-Sontag, Eduardo D - Lecture Notes on Mathematical Systems Biology

    22 Mar 2020 | | Contributor(s):: Brian Winkel

    Sontag, Eduardo D. 2018. Lecture Notes on Mathematical Systems Biology.  305 pp. See http://www.sontaglab.org/publications.html. Accessed 20 March 2020.The first version of these notes dates back to 2005. They were originally heavily inspired by Leah Keshet’s...

  11. 2007-Altafini, Claudio. 2007. ODEs models in Systems Biology. Lecture 5 & 6 SISSA. Presentation. 27 slides.

    20 Mar 2020 | | Contributor(s):: Brian Winkel

    Altafini, Claudio. 2007. ODEs models in Systems Biology. Lecture 5 & 6 SISSA. Presentation. 27 slides. From Opening Slide Systems Biology = investigates function of genetic, molecular and cellular processes in a systematic way: *making (biologically relevant) sense out of...

  12. 2017-Goulet, D. - Modeling, Simulating, and Parameter Fitting of Biochemical Kinetic Experiments.

    20 Mar 2020 | | Contributor(s):: Brian Winkel

    Goulet, D. 2017. Modeling, Simulating, and Parameter Fitting of Biochemical Kinetic Experiments. SIAM REVIEW. 58(2): 331–353.See https://locus.siam.org/doi/abs/10.1137/151004707 .Abstract. In many chemical and biological applications, systems of differential equations containing...

  13. 2003-Knorrenschild, Michael and Louis Gross - Text Books on Mathematical Modeling in Biology. Listing.

    13 Mar 2020 | | Contributor(s):: Brian Winkel

                    Text Books on Mathematical Modeling in BiologyCompiled from the Internet by Michael Knorrenschild,modified by Louis Gross, Oct. 1995, May 2000, March 2001, June 2003 Allan, Linda J....

  14. Abdessamad Tidane

    https://www.simiode.org/members/2253

  15. 2018-Alvey, Christina - Zombie Apocalypse in a Mathematical Biology Course

    19 Jan 2018 | | Contributor(s):: Christina Alvey

    Zombie Apocalypse in a Mathematical Biology CourseBy Christina Alvey, Mount Saint Mary College.A talk given at the AMS Special Session on Modeling in Differential Equations - High School, Two-Year College, Four-Year Institution at Joint Mathematics Meetings, San Diego CA, 9-13...

  16. 2012-Domingues, José Sérgio - Gompertz Model: Resolution and Analysis for Tumors.

    28 Nov 2017 | | Contributor(s):: Brian Winkel

    Domingues, José Sérgio. 2012.  Gompertz Model: Resolution and Analysis for Tumors. Journal of Mathematical Modelling and Application. 1(7): 70-77.See https://www.docenti.unina.it/webdocenti-be/allegati/materiale-didattico/620247 .Abstract:  It is called cancer...

  17. 2008-Brewer, D., M. Barenco, R. Callars, M. Hubank, and J. Stak - Fitting ordinary differential equations to short time course data

    21 Sep 2017 | | Contributor(s):: Brian Winkel

    Brewer, D., M. Barenco, R. Callars, M. Hubank, and J. Stak. 2008. Fitting ordinary differential equations to short time course data. Phil. Trans. R. Soc. A. 366: 519–544.Abstract: Ordinary differential equations (ODEs) are widely used to model many systems in physics, chemistry,...

  18. 2017-Wu, Hulin - Mathematical Biology Models Using Experimental Data

    12 Sep 2017 | | Contributor(s):: Brian Winkel

    Wu, Hulin.  Development of Mathematical Biology Models by Rigorously Using Experimental Data: Statistical Inverse Problems for Differential Equation Models. PowerPoint. 47 slides._ Inverse Problems and Methods for ODE Models_ Application Examples– Example 1: A Complex...

  19. 2007-Chern, I-Liang - Mathematical Modeling and Differential Equations. Notes.

    11 Sep 2017 | | Contributor(s):: Brian Winkel

    Chern, I-Liang. 2007. Mathematical Modeling and Differential Equations. Notes. 223 pp.See http://www.math.ntu.edu.tw/~chern/notes/ode2015.pdf . Accessed 10 September 2017.From the first chapter,In science, we explore and understand our real world by observations, collecting...

  20. 2011-Rodrıguez, Nancy. 2011. Applied Partial Differential Equations in Crime Modeling and Biological Aggregation

    09 Sep 2017 | | Contributor(s):: Brian Winkel

    Rodrıguez, Nancy. 2011. Applied Partial Differential Equations in Crime Modeling and Biological Aggregation. PhD Thesis. 137 pp. UCLA.From the opening,“Recently, there has been sustained interest in the use of partial differential equation (PDE) models to obtain insight into...