
Adam Rumpf
I am an applied mathematics instructor with a background in mathematical biology and operations research. I am quite interested in mathematics education and have released many openaccess...
https://www.simiode.org/members/6128

1098SNeuronDetection
25 Aug 2021   Contributor(s):: Joshua Goldwyn
In this activity students will study a linear, first order, onedimensional ordinary differential equation (ODE) and learn how it can be used to understand basics of neural dynamics. The modeling framework is known in the mathematical neuroscience literature as the ``integrateandfire''...

Richard A Cangelosi
I am an applied mathematician interested in modeling nonlinear phenomena. My focus is on applications related to the life sciences. I enjoy working collaboratively with Gonzaga undergraduates on...
https://www.simiode.org/members/5927

SIMIODE EXPO 2021  (MR3)  Case Study: A Model of Immunotherapy in Prostate Cancer
28 Feb 2021   Contributor(s):: Becky Sanft, Anne Walter
SIMIODE EXPO 2021  (MR3)  Case Study: A Model of Immunotherapy in Prostate Cancer Adventures in CoTeaching a DataDriven Modeling CourseBecky Sanft, University of North Carolina, Ashville NC USA and Anne Walter, St. Olaf College, Northfield MN USA This was a...

SIMIODE EXPO 2021  (MR3)  Adventures in CoTeaching a DataDriven Modeling Course
28 Feb 2021   Contributor(s):: Becky Sanft, Anne Walter
SIMIODE EXPO 2021  (MR3)  Minicourse on MathBio Wetlab Team Taught Course Adventures in CoTeaching a DataDriven Modeling CourseBecky Sanft, University of North Carolina, Ashville NC USA and Anne Walter, St. Olaf College, Northfield MN USA This was a...

2021Sanft, Rebecca, and Anne Walter  Exploring Mathematical Modeling in Biology Through Case Studies and Experimental Activities
20 Jan 2021   Contributor(s):: Rebecca Sanft, Anne Walter
Exploring Mathematical Modeling in Biology Through Case Studies and Experimental Activities, written collaboratively by a mathematician and biologist, provides supporting materials for a course taken simultaneously by students majoring in the mathematical sciences and those in the life sciences....

2017Byrne, Helen  Further Mathematics Biology. Lecture notes.
05 Apr 2020   Contributor(s):: Brian Winkel
2017ByrneFurtherMathBiologyNotesByrne, Helen. 2017. Further Mathematics Biology. Lecture notes. University of Oxford. See https://www.maths.ox.ac.uk/system/files/attachments/MathBioNotes2017.pdf . An outline for this course. We will observe that many...

2004Hsu, SzeBi  Mathematical Modelling In Biological Science. Class notes
02 Apr 2020   Contributor(s):: Brian Winkel
Hsu, SzeBi. 2014. Mathematical Modelling In Biological Science. Department of Mathematics,TsingHua University TAIWAN. Class Notes. 67 pages.Table of ContentsIntroduction 1 Continuous population model for single species 11.1 Logistic equation...

2018Winkle, James LJ., Oleg Igoshin, Matthew R. Bennett, Kresimir Josic, and William Ott  Modeling Mechanical Interactions in Growing Populations of RosShaped Bacteria.
01 Apr 2020   Contributor(s):: Brian Winkel
Winkle, James LJ., Oleg Igoshin, Matthew R. Bennett, Kresimir Josic, and William Ott. 2018. Modeling Mechanical Interactions in Growing Populations of RosShaped Bacteria. Phys. Biol. 14(5): 115. See https://www.ncbi.nlm.nih.gov/pubmed/28649958 .Abstract:...

2018Sontag, Eduardo D  Lecture Notes on Mathematical Systems Biology
22 Mar 2020   Contributor(s):: Brian Winkel
Sontag, Eduardo D. 2018. Lecture Notes on Mathematical Systems Biology. 305 pp. See http://www.sontaglab.org/publications.html. Accessed 20 March 2020.The first version of these notes dates back to 2005. They were originally heavily inspired by Leah Keshet’s...

2007Altafini, Claudio. 2007. ODEs models in Systems Biology. Lecture 5 & 6 SISSA. Presentation. 27 slides.
20 Mar 2020   Contributor(s):: Brian Winkel
Altafini, Claudio. 2007. ODEs models in Systems Biology. Lecture 5 & 6 SISSA. Presentation. 27 slides. From Opening Slide Systems Biology = investigates function of genetic, molecular and cellular processes in a systematic way: *making (biologically relevant) sense out of...

2017Goulet, D.  Modeling, Simulating, and Parameter Fitting of Biochemical Kinetic Experiments.
20 Mar 2020   Contributor(s):: Brian Winkel
Goulet, D. 2017. Modeling, Simulating, and Parameter Fitting of Biochemical Kinetic Experiments. SIAM REVIEW. 58(2): 331–353.See https://locus.siam.org/doi/abs/10.1137/151004707 .Abstract. In many chemical and biological applications, systems of differential equations containing...

2003Knorrenschild, Michael and Louis Gross  Text Books on Mathematical Modeling in Biology. Listing.
13 Mar 2020   Contributor(s):: Brian Winkel
Text Books on Mathematical Modeling in BiologyCompiled from the Internet by Michael Knorrenschild,modified by Louis Gross, Oct. 1995, May 2000, March 2001, June 2003 Allan, Linda J....

Abdessamad Tidane
https://www.simiode.org/members/2253

2018Alvey, Christina  Zombie Apocalypse in a Mathematical Biology Course
19 Jan 2018   Contributor(s):: Christina Alvey
Zombie Apocalypse in a Mathematical Biology CourseBy Christina Alvey, Mount Saint Mary College.A talk given at the AMS Special Session on Modeling in Differential Equations  High School, TwoYear College, FourYear Institution at Joint Mathematics Meetings, San Diego CA, 913...

2012Domingues, José Sérgio  Gompertz Model: Resolution and Analysis for Tumors.
28 Nov 2017   Contributor(s):: Brian Winkel
Domingues, José Sérgio. 2012. Gompertz Model: Resolution and Analysis for Tumors. Journal of Mathematical Modelling and Application. 1(7): 7077.See https://www.docenti.unina.it/webdocentibe/allegati/materialedidattico/620247 .Abstract: It is called cancer...

2008Brewer, D., M. Barenco, R. Callars, M. Hubank, and J. Stak  Fitting ordinary differential equations to short time course data
21 Sep 2017   Contributor(s):: Brian Winkel
Brewer, D., M. Barenco, R. Callars, M. Hubank, and J. Stak. 2008. Fitting ordinary differential equations to short time course data. Phil. Trans. R. Soc. A. 366: 519–544.Abstract: Ordinary differential equations (ODEs) are widely used to model many systems in physics, chemistry,...

2017Wu, Hulin  Mathematical Biology Models Using Experimental Data
12 Sep 2017   Contributor(s):: Brian Winkel
Wu, Hulin. Development of Mathematical Biology Models by Rigorously Using Experimental Data: Statistical Inverse Problems for Differential Equation Models. PowerPoint. 47 slides._ Inverse Problems and Methods for ODE Models_ Application Examples– Example 1: A Complex...

2007Chern, ILiang  Mathematical Modeling and Differential Equations. Notes.
11 Sep 2017   Contributor(s):: Brian Winkel
Chern, ILiang. 2007. Mathematical Modeling and Differential Equations. Notes. 223 pp.See http://www.math.ntu.edu.tw/~chern/notes/ode2015.pdf . Accessed 10 September 2017.From the first chapter,In science, we explore and understand our real world by observations, collecting...

2011Rodrıguez, Nancy. 2011. Applied Partial Differential Equations in Crime Modeling and Biological Aggregation
09 Sep 2017   Contributor(s):: Brian Winkel
Rodrıguez, Nancy. 2011. Applied Partial Differential Equations in Crime Modeling and Biological Aggregation. PhD Thesis. 137 pp. UCLA.From the opening,“Recently, there has been sustained interest in the use of partial differential equation (PDE) models to obtain insight into...