Tags: kinetics

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  1. 5-010-S-DNADegradation

    21 Apr 2020 | | Contributor(s):: Brian Winkel

    We ask students to use the system of first order linear differential equations given in a source paper and estimates of the data from laboratory procedures from a plot to estimate the parameters and complete the modeling process. Then we seek to compare the results of the final model with...

  2. 2020-Vailance, Claire - Reaction Kinetics - Course materials

    06 Apr 2020 | | Contributor(s):: Brian Winkel

    Vailance, Claire. Reaciton Kinetics. Course Notes. 31 pages.Source: http://vallance.chem.ox.ac.uk/CVteaching.html IntroductionChemical reaction kinetics deals with the rates of chemical processes. Any chemical process may be broken down into a sequence of one or more single-step...

  3. 2018-Phair, Robert - Differential equation methods for simulation of GFP kinetics in non–steady state experiments.

    06 Apr 2020 | | Contributor(s):: Brian Winkel

    Phair, Robert. 2018. Differential equation methods for simulation of GFP kinetics in non–steady state experiments. Molecular Biology of the Cell. 29: 763-771. See https://www.molbiolcell.org/doi/pdf/10.1091/mbc.E17-06-0396.ABSTRACT: Genetically encoded...

  4. 1987-Marmasse, Claude -Studies on the differential equations of enzyme kinetics. I. Biomolecular scheme: Simplified Models

    05 Apr 2020 | | Contributor(s):: Brian Winkel

    Marmasse, Claude. 1987. Studies on the differential equations of enzyme kinetics. I. Biomolecular scheme: Simplified Models.  Internat. J. Math. & Math. Sci. 10(4): 797-804.See https://www.hindawi.com/journals/ijmms/1987/319265/ .ABSTRACT: The main properties of the solution...

  5. 2007-Helfgott,  Michel and Edith Seier - Some Mathematical and Statistical Aspects of Enzyme Kinetics.

    05 Apr 2020 | | Contributor(s):: Brian Winkel

    2007-HelfgottSeier-MathStatAspectsOfEnzymeKineticsHelfgott,  Michel and Edith Seier. 2007.  Some Mathematical and Statistical Aspects of Enzyme Kinetics. The Journal of Online Mathematics and Its Applications. Volume 7, October 2007, Article ID...

  6. 2014-Rea, Jonathan - Kinetic Modeling and Experimentation of Anaerobic Digestion. Thesis.

    05 Apr 2020 | | Contributor(s):: Brian Winkel

    Rea, Jonathan. 2014.  Kinetic Modeling and Experimentation of Anaerobic Digestion. MIT Mechanical Engineering Undergraduate Thesis.ABSTRACT: Anaerobic digesters convert organic waste (agricultural and food waste, animal or human manure, and other organic waste), into energy (in...

  7. 1984-Brunner, Walter and Dennis D. Focht - Deterministic Three-Half-Order Kinetic Model for Microbial Degradation of Added Carbon Substrates in Soil

    05 Apr 2020 | | Contributor(s):: Brian Winkel

    BRUNNER, WALTER AND DENNIS D. FOCHT. 1984.  Deterministic Three-Half-Order Kinetic Model for Microbial Degradation of Added Carbon Substrates in Soil. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 47(1): 167-172.See https://pubmed.ncbi.nlm.nih.gov/16346454/ .Abstract: The...

  8. 2004-Hsu, Sze-Bi - Mathematical Modelling In Biological Science. Class notes

    02 Apr 2020 | | Contributor(s):: Brian Winkel

    Hsu, Sze-Bi. 2014. Mathematical Modelling In Biological Science. Department of Mathematics,Tsing-Hua University TAIWAN. Class Notes. 67 pages.Table of ContentsIntroduction 1 Continuous population model for single species 11.1 Logistic equation...

  9. 2003-Carson, Richard - Tracer kinetic modeling in PET

    02 Apr 2020 | | Contributor(s):: Brian Winkel

    Carson, Richard. 2003. Tracer kinetic modeling in PET. Chapter reproduced from Valk PE, Bailey DL, Townsend DW, Maisey MN. Positron Emission Tomography: Basic Science and Clinical Practice. Springer-Verlag London Ltd 2003,...

  10. 2012-Bech, Michael Møller; Morten Lykkegaard Christensen; Lars Diekhöner; Christian Frier; Olav Geil; Erik Lund; Peter Nielsen; Thomas Garm Pedersen; Bo Rosbjerg - ResourcesForEngineeringApplicationsOfMath

    01 Apr 2020 | | Contributor(s):: Brian Winkel

    Bech, Michael Møller, Morten Lykkegaard Christensen, Lars Diekhöner, Christian Frier, Olav Geil,Erik Lund, Peter Nielsen, Thomas Garm Pedersen, Bo Rosbjerg. 2012. APPLICATIONS OF MATHEMATICSIN ENGINEERING AND SCIENCE. School of Engineering and Science, Aalborg University. 26...

  11. 2016-Keszei, Ernő - Chemical Kinetics for Beginners. 

    27 Mar 2020 | | Contributor(s):: Brian Winkel

    Keszei, Ernő. 2016.  Chemical Kinetics for Beginners. Course material supported by the Higher Education Restructuring Fund allocated to ELTE by the Hungarian Government.Table of ContentsContents 31. Introduction 42. Formal kinetic description of elementary reactions...

  12. 2009-Chellaboina, Vijaysekhar, Sanjay P. Bhat, Wassil M. Haddad, Dennis S. Bernstein - Modeling And Analysis - Mass Action Kinetics.

    26 Mar 2020 | | Contributor(s):: Brian Winkel

    Chellaboina, Vijaysekhar, Sanjay P. Bhat, Wassil M. Haddad, Dennis S. Bernstein. 2009. Modeling And Analysis - Mass Action Kinetics. IEEE Control Systems Magazine. August. 60-78.See https://ieeexplore.ieee.org/document/5184956. From the Introduction:"Mass-action...

  13. 2018-Chen, Franklin M. - Teaching Kinetics through Differential Equations Constructed with a Berkeley MadonnaTM Flow Chart Model.

    26 Mar 2020 | | Contributor(s):: Brian Winkel

    Chen, Franklin M. 2018.  Teaching Kinetics through Differential Equations Constructed with a Berkeley MadonnaTM Flow Chart Model. Journal of Computational Science Education. 9(1):...

  14. 2010-Chicone, C. - Mathematical Modeling and Chemical Kinetics. Notes

    26 Mar 2020 | | Contributor(s):: Brian Winkel

    2010-Chicone-MathModelingANDChemicalKineticsChicone, C.  2010. Mathematical Modeling and Chemical Kinetics. Notes. 14 pp.Motivated by physical science motion laws the author moves into kinetics and life science applications of differential equations.From early section...

  15. 2010-Smolander-DEForChemicalKinetics

    26 Mar 2020 | | Contributor(s):: Brian Winkel

    2010-Smolander-DEForChemicalKineticsSmolander, Sampo. 2010. Differential equations for chemical kinetics. Atmospheric Modelling course. Helsinki FINLAND. 24 slides.Presentation on chemical kinetics in the atmosphere.

  16. 1989-Rodin, E. Y. and K. Egan - Mathematics modelling of the rate of chemical reactions.

    25 Mar 2020 | | Contributor(s):: Brian Winkel

    Rodin, E. Y. and K. Egan. 1989. Mathematics modelling of the rate of chemical reactions. Modelling. 12(12): 1707-1713.See https://www.sciencedirect.com/science/article/pii/0895717789903439. Introduction:The development of improved designs for chemical reactors as well as the...

  17. 2000-Erdman, Donald  and Maurice M. Morelock - A Study of Kinetics: The Estimation and Simulation of Systems of First-Order Differential Equations. Notes.

    25 Mar 2020 | | Contributor(s):: Brian Winkel

    Erdman, Donald  and Maurice M. Morelock. 2000. A Study of Kinetics: The Estimation and Simulation of Systems of First-Order Differential Equations. Notes. 8...

  18. 2018-Sontag, Eduardo D - Lecture Notes on Mathematical Systems Biology

    22 Mar 2020 | | Contributor(s):: Brian Winkel

    Sontag, Eduardo D. 2018. Lecture Notes on Mathematical Systems Biology.  305 pp. See http://www.sontaglab.org/publications.html. Accessed 20 March 2020.The first version of these notes dates back to 2005. They were originally heavily inspired by Leah Keshet’s...

  19. 2007-Altafini, Claudio. 2007. ODEs models in Systems Biology. Lecture 5 & 6 SISSA. Presentation. 27 slides.

    20 Mar 2020 | | Contributor(s):: Brian Winkel

    Altafini, Claudio. 2007. ODEs models in Systems Biology. Lecture 5 & 6 SISSA. Presentation. 27 slides. From Opening Slide Systems Biology = investigates function of genetic, molecular and cellular processes in a systematic way: *making (biologically relevant) sense out of...

  20. 2014-Cain, John W. - Chemical Reaction Kinetics Mathematical Underpinnings

    20 Mar 2020 | | Contributor(s):: Brian Winkel

    Cain, John W. 2014. Chemical Reaction Kinetics: Mathematical Underpinnings. In: Bell E. (eds) Molecular Life Sciences. Springer, New York, NYSee https://link.springer.com/referenceworkentry/10.1007%2F978-1-4614-6436-5_564-1 .From Introduction, "Mathematical modeling and simulation of...